mcp-server/src/legal_mcp/services/db.py

@@ -1149,6 +1149,14 @@ CREATE TABLE IF NOT EXISTS halacha_citation_corroboration (
 CREATE INDEX IF NOT EXISTS idx_hcc_halacha ON halacha_citation_corroboration(halacha_id);
 """
 
+SCHEMA_V25_SQL = """
+-- Crash-safe halacha extraction: per-chunk checkpoint enables incremental store
+-- + resume. A chunk with halacha_extracted_at set has been processed; a resumed
+-- run skips it (so a crash never loses completed chunks or re-pays for them).
+ALTER TABLE precedent_chunks
+    ADD COLUMN IF NOT EXISTS halacha_extracted_at TIMESTAMPTZ;
+"""
+
 
 async def _run_schema_migrations(pool: asyncpg.Pool) -> None:
     async with pool.acquire() as conn:
@@ -1177,7 +1185,8 @@ async def _run_schema_migrations(pool: asyncpg.Pool) -> None:
         await conn.execute(SCHEMA_V22_SQL)
         await conn.execute(SCHEMA_V23_SQL)
         await conn.execute(SCHEMA_V24_SQL)
-    logger.info("Database schema initialized (v1-v24)")
+        await conn.execute(SCHEMA_V25_SQL)
+    logger.info("Database schema initialized (v1-v25)")
 
 
 async def init_schema() -> None:
@@ -3199,7 +3208,8 @@ async def list_precedent_chunks(
     pool = await get_pool()
     if section_types:
         rows = await pool.fetch(
-            """SELECT id, chunk_index, content, section_type, page_number
+            """SELECT id, chunk_index, content, section_type, page_number,
+                      halacha_extracted_at
                FROM precedent_chunks
                WHERE case_law_id = $1 AND section_type = ANY($2::text[])
                ORDER BY chunk_index""",
@@ -3207,7 +3217,8 @@ async def list_precedent_chunks(
         )
     else:
         rows = await pool.fetch(
-            """SELECT id, chunk_index, content, section_type, page_number
+            """SELECT id, chunk_index, content, section_type, page_number,
+                      halacha_extracted_at
                FROM precedent_chunks
                WHERE case_law_id = $1
                ORDER BY chunk_index""",
@@ -3280,6 +3291,89 @@ async def store_halachot(case_law_id: UUID, halachot: list[dict]) -> int:
     return len(halachot)
 
 
+async def reset_halacha_extraction(case_law_id: UUID) -> None:
+    """Force a clean re-extraction: wipe halachot + clear per-chunk checkpoints
+    so every chunk is re-processed (used by explicit re-extract, not resume)."""
+    pool = await get_pool()
+    async with pool.acquire() as conn:
+        async with conn.transaction():
+            await conn.execute("DELETE FROM halachot WHERE case_law_id = $1", case_law_id)
+            await conn.execute(
+                "UPDATE precedent_chunks SET halacha_extracted_at = NULL "
+                "WHERE case_law_id = $1", case_law_id,
+            )
+
+
+async def mark_all_chunks_extracted(case_law_id: UUID) -> int:
+    """Checkpoint every un-marked chunk of a precedent as extracted.
+
+    Used to backfill pre-V25 precedents (halachot already exist but no chunk was
+    checkpointed) so a resume run skips them instead of re-extracting (which
+    would duplicate). Returns rows updated.
+    """
+    pool = await get_pool()
+    result = await pool.execute(
+        "UPDATE precedent_chunks SET halacha_extracted_at = now() "
+        "WHERE case_law_id = $1 AND halacha_extracted_at IS NULL", case_law_id,
+    )
+    try:
+        return int(result.split()[-1])
+    except (ValueError, IndexError):
+        return 0
+
+
+async def store_halachot_for_chunk(
+    case_law_id: UUID, chunk_id: UUID, halachot: list[dict],
+) -> int:
+    """Persist ONE chunk's halachot and mark the chunk done — atomically.
+
+    Crash-safe + resumable: each chunk's results land in the DB the moment it
+    finishes, and the chunk is flagged (``halacha_extracted_at``) so a resumed
+    run skips it. ``halacha_index`` continues from the current max so appends
+    across chunks never collide. The chunk is marked even when ``halachot`` is
+    empty (so resume skips genuinely-empty chunks too). Caller serializes calls
+    (a single in-process store-lock) so the MAX read stays race-free.
+    """
+    threshold = config.HALACHA_AUTO_APPROVE_THRESHOLD
+    pool = await get_pool()
+    async with pool.acquire() as conn:
+        async with conn.transaction():
+            base = await conn.fetchval(
+                "SELECT COALESCE(MAX(halacha_index), -1) + 1 FROM halachot "
+                "WHERE case_law_id = $1", case_law_id,
+            )
+            for j, h in enumerate(halachot):
+                confidence = float(h.get("confidence", 0.0))
+                auto_approve = confidence >= threshold
+                review_status = "approved" if auto_approve else "pending_review"
+                reviewer = (
+                    f"auto-approved (confidence ≥ {threshold:.2f})"
+                    if auto_approve else None
+                )
+                reviewed_at_clause = "now()" if auto_approve else "NULL"
+                await conn.execute(
+                    f"""INSERT INTO halachot
+                       (case_law_id, halacha_index, rule_statement, rule_type,
+                        reasoning_summary, supporting_quote, page_reference,
+                        practice_areas, subject_tags, cites, confidence,
+                        quote_verified, embedding, review_status,
+                        reviewer, reviewed_at)
+                       VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10, $11,
+                               $12, $13, $14, $15, {reviewed_at_clause})""",
+                    case_law_id, base + j, h["rule_statement"],
+                    h.get("rule_type", "binding"), h.get("reasoning_summary", ""),
+                    h["supporting_quote"], h.get("page_reference", ""),
+                    h.get("practice_areas", []), h.get("subject_tags", []),
+                    h.get("cites", []), confidence, h.get("quote_verified", False),
+                    h.get("embedding"), review_status, reviewer,
+                )
+            await conn.execute(
+                "UPDATE precedent_chunks SET halacha_extracted_at = now() "
+                "WHERE id = $1", chunk_id,
+            )
+    return len(halachot)
+
+
 async def list_halachot(
     case_law_id: UUID | None = None,
     review_status: str | None = None,

mcp-server/src/legal_mcp/services/halacha_extractor.py

@@ -342,9 +342,14 @@ async def _extract_chunk(
     return [], False
 
 
-async def extract(case_law_id: UUID | str) -> dict:
+async def extract(case_law_id: UUID | str, force: bool = False) -> dict:
     """Extract halachot from an uploaded precedent — globally serialized.
 
+    ``force=False`` (default) RESUMES: chunks already extracted (checkpointed)
+    are skipped, so a crash/interrupt never loses completed work or re-pays for
+    it. ``force=True`` wipes prior halachot + checkpoints and re-extracts all
+    (used by explicit re-extraction).
+
     Takes a PostgreSQL advisory lock so only ONE extraction runs at a time
     across ALL processes (agent retries + batch ``process_pending`` spawn
     independent OS drivers; an in-process Semaphore can't see them). If another
@@ -374,7 +379,7 @@ async def extract(case_law_id: UUID | str) -> dict:
                 "case_law_id": str(case_law_id),
             }
         try:
-            return await _extract_impl(case_law_id)
+            return await _extract_impl(case_law_id, force=force)
         finally:
             await lock_conn.fetchval(
                 "SELECT pg_advisory_unlock($1)", _HALACHA_EXTRACT_LOCK_KEY,
@@ -383,11 +388,14 @@ async def extract(case_law_id: UUID | str) -> dict:
         await pool.release(lock_conn)
 
 
-async def _extract_impl(case_law_id: UUID) -> dict:
+async def _extract_impl(case_law_id: UUID, force: bool = False) -> dict:
     """Core extraction (caller holds the global advisory lock for the duration).
 
-    Idempotent: replaces any existing halachot for this case_law_id.
-    All inserted rows start as ``review_status='pending_review'``.
+    Crash-safe + resumable: each chunk's halachot are stored AND the chunk is
+    checkpointed (``precedent_chunks.halacha_extracted_at``) the moment it
+    finishes. A crash/interrupt loses at most the in-flight chunk; a re-run
+    resumes — already-done chunks are skipped, failed/pending chunks retried.
+    ``force=True`` wipes prior halachot + checkpoints and re-extracts all.
     """
     record = await db.get_case_law(case_law_id)
     if not record:
@@ -415,111 +423,135 @@ async def _extract_impl(case_law_id: UUID) -> dict:
         await db.set_case_law_halacha_status(case_law_id, "completed")
         return {"status": "no_chunks", "extracted": 0, "stored": 0}
 
-    await db.set_case_law_halacha_status(case_law_id, "processing")
-    await db.delete_halachot(case_law_id)
+    # force = clean slate; otherwise resume (skip already-checkpointed chunks).
+    if force:
+        await db.reset_halacha_extraction(case_law_id)
+        for c in chunks:
+            c["halacha_extracted_at"] = None
 
+    await db.set_case_law_halacha_status(case_law_id, "processing")
+
+    pending = [c for c in chunks if c.get("halacha_extracted_at") is None]
+
+    # Legacy guard: a precedent extracted before V25 has halachot but NO chunk
+    # checkpoints. Re-extracting (append-per-chunk) would DUPLICATE them. If
+    # nothing is checkpointed yet but halachot already exist, backfill the
+    # checkpoints and treat as complete instead of re-extracting.
+    if not force and len(pending) == len(chunks):
+        already = await db.list_halachot(case_law_id=case_law_id, limit=1)
+        if already:
+            await db.mark_all_chunks_extracted(case_law_id)
+            total = len(await db.list_halachot(case_law_id=case_law_id, limit=10_000))
+            await db.set_case_law_halacha_status(case_law_id, "completed")
+            logger.info(
+                "halacha_extractor: case_law=%s legacy-backfill — %d existing "
+                "halachot, checkpoints backfilled (no re-extract).",
+                case_law_id, total,
+            )
+            return {"status": "completed", "extracted": total, "stored": total,
+                    "legacy_backfill": True, "total_chunks": len(chunks)}
+
+    if not pending:
+        # Resume found nothing left — every chunk already extracted.
+        total = len(await db.list_halachot(case_law_id=case_law_id, limit=10_000))
+        await db.set_case_law_halacha_status(case_law_id, "completed")
+        return {"status": "completed", "extracted": total, "stored": total,
+                "resumed": True, "total_chunks": len(chunks)}
+
+    full_text = record.get("full_text") or ""
     citation = record.get("case_number", "")
     court = record.get("court", "")
     date_str = str(record.get("date") or "")
     context = f"מקור: {citation} — {court}, {date_str}"
+    idx_by_id = {c["id"]: i for i, c in enumerate(chunks)}
 
     sem = asyncio.Semaphore(CHUNK_CONCURRENCY)
+    store_lock = asyncio.Lock()  # serialize per-chunk stores (index continuity)
+    stored_total = 0
+    failed_chunks = 0
 
-    async def _bounded(idx: int, chunk_row: dict) -> tuple[list[dict], bool]:
+    async def _process(chunk_row: dict) -> None:
+        nonlocal stored_total, failed_chunks
         async with sem:
-            return await _extract_chunk(
+            items, ok = await _extract_chunk(
                 chunk_row["content"], chunk_row["section_type"],
-                idx, len(chunks), context, is_binding,
+                idx_by_id[chunk_row["id"]], len(chunks), context, is_binding,
+            )
+        if not ok:
+            failed_chunks += 1  # leave chunk un-checkpointed → retried on resume
+            return
+        cleaned: list[dict] = []
+        for raw in items:
+            coerced = _coerce_halacha(raw, is_binding=is_binding)
+            if coerced is None:
+                continue
+            coerced["quote_verified"] = _verify_quote(
+                coerced["supporting_quote"], full_text,
+            )
+            cleaned.append(coerced)
+        if cleaned:
+            embed_inputs = [
+                f"{h['rule_statement']} — {h['reasoning_summary']}".strip(" —")
+                for h in cleaned
+            ]
+            try:
+                vectors = await embeddings.embed_texts(embed_inputs, input_type="document")
+            except Exception as e:
+                logger.error("halacha_extractor: embeddings failed: %s", e)
+                vectors = [None] * len(cleaned)
+            for h, vec in zip(cleaned, vectors):
+                h["embedding"] = vec
+        # Store this chunk's halachot AND checkpoint the chunk, atomically.
+        async with store_lock:
+            stored_total += await db.store_halachot_for_chunk(
+                case_law_id, chunk_row["id"], cleaned,
             )
 
-    chunk_results = await asyncio.gather(
-        *[_bounded(i, c) for i, c in enumerate(chunks)]
-    )
-    raw_halachot: list[dict] = []
-    failed_chunks = 0
-    for items, ok in chunk_results:
-        raw_halachot.extend(items)
-        if not ok:
-            failed_chunks += 1
+    await asyncio.gather(*[_process(c) for c in pending])
 
-    # If most chunks failed (rate limit storm, claude_session crash, etc.)
-    # do NOT touch the DB status — leave it 'processing' so the caller can
-    # retry without the request falling out of the queue. The caller
-    # (`process_pending_extractions`) is responsible for either retrying or
-    # finalising the status as 'failed' after retries are exhausted. This
-    # is the bug that produced 317/10's silent `no_halachot` after a
-    # 129-chunk neighbour saturated the API.
-    failure_rate = failed_chunks / len(chunks) if chunks else 0
-    if failure_rate >= EXTRACTION_FAILURE_THRESHOLD and not raw_halachot:
-        logger.error(
-            "halacha_extractor: case_law=%s extraction_failed — "
-            "%d/%d chunks failed (rate=%.0f%%), no halachot retrieved. "
-            "DB status left as 'processing' for caller-level retry.",
-            case_law_id, failed_chunks, len(chunks), failure_rate * 100,
+    # Decide final status from what's LEFT (re-read checkpoints).
+    after = await db.list_precedent_chunks(case_law_id, section_types=EXTRACTABLE_SECTIONS)
+    if not after:
+        after = await db.list_precedent_chunks(case_law_id)
+    still_pending = sum(1 for c in after if c.get("halacha_extracted_at") is None)
+    total = len(await db.list_halachot(case_law_id=case_law_id, limit=10_000))
+
+    if still_pending:
+        # Some chunks failed this run. Leave status 'processing' so a resume
+        # continues them (no progress is lost — done chunks are checkpointed).
+        if total == 0 and failed_chunks >= len(pending) * EXTRACTION_FAILURE_THRESHOLD:
+            logger.error(
+                "halacha_extractor: case_law=%s extraction_failed — %d/%d pending "
+                "chunks failed, 0 stored. status left 'processing' for retry.",
+                case_law_id, failed_chunks, len(pending),
+            )
+            return {"status": "extraction_failed", "extracted": 0, "stored": 0,
+                    "failed_chunks": failed_chunks, "pending_chunks": still_pending,
+                    "total_chunks": len(chunks)}
+        logger.warning(
+            "halacha_extractor: case_law=%s partial — %d chunks still pending, "
+            "%d halachot stored so far. status 'processing' (resume to finish).",
+            case_law_id, still_pending, total,
         )
-        return {
-            "status": "extraction_failed",
-            "extracted": 0,
-            "stored": 0,
-            "failed_chunks": failed_chunks,
-            "total_chunks": len(chunks),
-        }
+        return {"status": "partial", "extracted": total, "stored": stored_total,
+                "pending_chunks": still_pending, "total_chunks": len(chunks)}
 
-    if not raw_halachot:
-        await db.set_case_law_halacha_status(case_law_id, "completed")
-        return {
-            "status": "no_halachot",
-            "extracted": 0,
-            "stored": 0,
-            "failed_chunks": failed_chunks,
-            "total_chunks": len(chunks),
-        }
-
-    # Validate against the full text of the precedent for the quote check.
-    full_text = record.get("full_text") or ""
-
-    cleaned: list[dict] = []
-    for raw in raw_halachot:
-        coerced = _coerce_halacha(raw, is_binding=is_binding)
-        if coerced is None:
-            continue
-        coerced["quote_verified"] = _verify_quote(
-            coerced["supporting_quote"], full_text,
-        )
-        cleaned.append(coerced)
-
-    if not cleaned:
-        await db.set_case_law_halacha_status(case_law_id, "completed")
-        return {"status": "no_valid_halachot", "extracted": len(raw_halachot), "stored": 0}
-
-    # Embed rule_statement + reasoning_summary so semantic search hits the
-    # rule directly rather than the surrounding chunk centroid.
-    embed_inputs = [
-        f"{h['rule_statement']} — {h['reasoning_summary']}".strip(" —")
-        for h in cleaned
-    ]
-    try:
-        vectors = await embeddings.embed_texts(embed_inputs, input_type="document")
-    except Exception as e:
-        logger.error("halacha_extractor: embeddings failed: %s", e)
-        vectors = [None] * len(cleaned)
-
-    for halacha, vec in zip(cleaned, vectors):
-        halacha["embedding"] = vec
-
-    stored = await db.store_halachot(case_law_id, cleaned)
-
-    verified = sum(1 for h in cleaned if h["quote_verified"])
+    # All chunks done.
+    stored = total
+    verified = sum(1 for h in await db.list_halachot(case_law_id=case_law_id, limit=10_000)
+                   if h.get("quote_verified"))
     await db.set_case_law_halacha_status(case_law_id, "completed")
 
     logger.info(
-        "halacha_extractor: case_law=%s extracted=%d cleaned=%d verified=%d stored=%d",
-        case_law_id, len(raw_halachot), len(cleaned), verified, stored,
+        "halacha_extractor: case_law=%s completed — %d halachot stored "
+        "(%d new this run), %d quote-verified, %d chunks",
+        case_law_id, total, stored_total, verified, len(chunks),
     )
     return {
         "status": "completed",
-        "extracted": len(raw_halachot),
-        "valid": len(cleaned),
+        "extracted": total,
         "verified": verified,
         "stored": stored,
+        "stored_this_run": stored_total,
+        "total_chunks": len(chunks),
     }

mcp-server/src/legal_mcp/services/precedent_library.py

@@ -156,7 +156,10 @@ async def reextract_halachot(
     # bad data. See note in db.request_metadata_extraction.
 
     await progress("extracting_halachot", 50, "מחלץ הלכות מחדש")
-    result = await halacha_extractor.extract(case_law_id)
+    # Explicit re-extraction = clean slate (force): wipe prior halachot +
+    # per-chunk checkpoints and redo all. (Queue draining / resume uses the
+    # default force=False so an interrupted run continues where it stopped.)
+    result = await halacha_extractor.extract(case_law_id, force=True)
     # Clear the queue timestamp on completion so the UI badge / worker queue
     # don't keep showing this row. The queue worker (process_pending_extractions)
     # already does this; mirror it here so per-record extraction drains too.