Inline # comments in gitignore are not supported — they were silently
breaking three patterns (data/checkpoints/, data/adapter-migration-state.json,
.claude/agents/.generated/). Moved comments to their own lines and added
missing entries for runtime dirs (data/audit/, data/logs/, etc.) and
temp files (.interaction_tmp.json, .design-build/, .taskmaster bak files).
Also tracks previously untracked legitimate files: scripts, tests, docs,
skills references, .env.example, taskmaster templates.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
